These moist, decadent gluten-free chocolate zucchini muffins pack hidden veggies and rich chocolate flavor into every bite. They’re perfectly sweet without refined sugar and ready in just 35 minutes!
Why You’ll Love Gluten-Free Chocolate Zucchini Muffins
- ❤️ Hidden Veggies: Sneaky nutrition kids won’t even notice
- ⏱️ Quick Prep: Ready in just 35 minutes from start to finish
- 🍫 Double Chocolate: Rich cocoa and chocolate chips in every bite
- 🌱 Allergy-Friendly: Gluten-free and easily made dairy-free

Gluten-Free Chocolate Zucchini Muffins Ingredients
Let’s gather our star players for these incredibly moist, chocolatey treats! I’m always amazed at how zucchini transforms into this magical moisture-keeper in baking. Here’s what you’ll need:
Dry Ingredients:
- 2 cups gluten-free flour blend (with xanthan gum)
- ⅔ cup unsweetened cocoa powder
- 1 teaspoon baking soda
- ½ teaspoon baking powder
- ½ teaspoon salt
- 1 teaspoon cinnamon
- ½ cup chocolate chips (plus more for topping)
Wet Ingredients:
- 2 large eggs, room temperature
- ½ cup maple syrup or honey
- ⅓ cup coconut oil, melted
- ¼ cup unsweetened applesauce
- 1 teaspoon vanilla extract
- 1½ cups grated zucchini (about 1 medium zucchini)
Tools Used to Make Gluten-Free Chocolate Zucchini Muffins
My kitchen adventures always flow smoother with the right tools at hand! For these muffins, you’ll want:
- Standard 12-cup muffin tin
- Paper liners or non-stick spray
- Box grater for zucchini
- Mixing bowls (large for wet ingredients, medium for dry)
- Kitchen towel or cheesecloth for squeezing zucchini
- Measuring cups and spoons
- Wooden spoon or spatula
- Ice cream scoop (for perfectly portioned muffins)
How to Make Gluten-Free Chocolate Zucchini Muffins
I’ve made these muffins countless times for Saturday morning breakfasts, and I promise they’re nearly impossible to mess up! Let’s break it down:

- Prep work: Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease.
- Prepare the zucchini: Grate your zucchini using the large holes of a box grater. Place the grated zucchini in a clean kitchen towel and squeeze out excess moisture. Trust me, this step is crucial for the perfect texture!
- Mix dry ingredients: In a medium bowl, whisk together the gluten-free flour, cocoa powder, baking soda, baking powder, salt, and cinnamon until well combined.
- Combine wet ingredients: In a large bowl, whisk together eggs, maple syrup, melted coconut oil, applesauce, and vanilla extract until smooth and well incorporated.
- Bring it all together: Fold the dry ingredients into the wet mixture, stirring just until combined. Don’t overmix – that’s my secret to tender muffins! Gently fold in the squeezed zucchini and chocolate chips.
- Fill and bake: Divide the batter evenly among muffin cups, filling each about ¾ full. Sprinkle a few extra chocolate chips on top (because who doesn’t love more chocolate?). Bake for 22-25 minutes or until a toothpick inserted in the center comes out mostly clean with a few moist crumbs.
- Cool: Allow muffins to cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
I love watching the kitchen fill with that irresistible chocolate aroma as these bake. Sometimes I can hardly wait for them to cool before sneaking one!
Variations of Gluten-Free Chocolate Zucchini Muffins
The beauty of these muffins is how versatile they are! Here are some of my favorite ways to switch things up:
- Nutty Chocolate: Add ½ cup of chopped walnuts or pecans for added texture and healthy fats. My daughter claims this makes them taste like fancy bakery muffins!
- Double Chocolate Chunk: Use dark chocolate chunks instead of chips for serious chocolate lovers. I made these for a brunch gathering last month and they disappeared within minutes!
- Spiced Chocolate: Increase the cinnamon to 1½ teaspoons and add ¼ teaspoon of cardamom for a warm, spiced flavor profile that’s perfect for fall mornings.
- Orange Chocolate: Add 1 tablespoon of orange zest to the wet ingredients for a chocolate-orange combo that’s absolutely divine. This variation reminds me of those chocolate orange slices I loved as a kid!
- Dairy-Free Option: Use dairy-free chocolate chips to make these completely dairy-free. No one will ever know the difference!
Serving Gluten-Free Chocolate Zucchini Muffins
These muffins are incredibly versatile and can be enjoyed in so many delicious ways! Here’s how we love to serve them:

For breakfast, I’ll often warm a muffin slightly and spread a thin layer of almond butter on top – the combination of chocolate and nut butter is absolutely heavenly with a cup of coffee! My husband prefers his straight from the container with a cold glass of almond milk.
For dessert, try cutting a muffin in half, warming it up, and topping with a small scoop of vanilla ice cream or coconut whipped cream. The contrast of warm muffin and cold topping creates a simple but impressive treat for unexpected guests!
They also make perfect lunchbox treats – I’ll pack one alongside some fresh fruit and protein for a balanced lunch my kids actually get excited about. The best part? They never suspect they’re eating veggies!
Store these muffins in an airtight container at room temperature for up to 3 days, or freeze for up to 3 months. I often make a double batch specifically to freeze half for busy mornings when we need a quick breakfast on the go.
Frequently Asked Questions
Final Thoughts
These gluten-free chocolate zucchini muffins prove that healthy can be incredibly delicious! They’re perfect for sneaking vegetables into picky eaters’ diets and satisfying chocolate cravings guilt-free. Try them today and watch them disappear!
More Recipes to Try!
Looking for more delicious gluten-free treats? Here are some favorites you’ll love:
- Ultimate No-Bake Oreo Cheesecake
- Foolproof Nutella Ferrero Rocher Cookie Pie
- Quick Nutella Stuffed Cookie Cups
- Fluffy Blueberry Protein Muffins
- The Ultimate Easy Carrot Cake Bars
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